Co-expression analysis

Gene ID	PtpAffx.213981.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g22400: UGT85A1 (HF=1e-2)
Module size	6 genes
NF	0.05
%ile	11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	74.6	0.81	PtpAffx.213981.1.S1_at	pmrna27244	hypothetical protein	-	1e-2	At1g22400	UGT85A1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.81	PtpAffx.207261.1.S1_at	pmrna14405	hypothetical protein	-	2e-11	At5g67140	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.80	PtpAffx.205638.1.S1_s_at	pmrna11132	hypothetical protein	-	1e+0	At5g05280	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.81	PtpAffx.86839.1.A1_at	DN487980	-	-	1e+0	At4g32870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.81	PtpAffx.213631.1.S1_at	pmrna26624	hypothetical protein	-	1e+0	At5g16090	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.81	Ptp.2788.1.S1_at	DN488265	-	-	1e+0	At1g32760	glutaredoxin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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