CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.213954.1.S1_at

Gene name pho1-like protein
Homology with Arabidopsis Similar to At2g03260: EXS family protein / ERD1/XPR1/SYG1 family protein (HF=3e-13)

Module size 6 genes

NF 0.52

%ile 82.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.88 PtpAffx.213954.1.S1_at pmrna27198 pho1-like protein - 3e-13 At2g03260 EXS family protein / ERD1/XPR1/SYG1 family protein O.I. H.G. S.X.
0.73 93.6 0.83 PtpAffx.30567.1.A1_at CV261850 hypothetical protein - 1e-1 At5g41071 unknown protein O.I. H.G. S.X.
0.53 80.5 0.90 PtpAffx.127785.1.S1_at CV244219 hypothetical protein - 6e+0 At4g35070 - O.I. H.G. S.X.
0.42 68.6 0.87 PtpAffx.75514.1.A1_at CV267254 - - 8e-2 At2g01530 MLP329 (MLP-LIKE PROTEIN 329) O.I. H.G. S.X.
0.33 57.5 0.90 PtpAffx.211977.1.S1_at pmrna23523 hypothetical protein - 6e-3 At1g29000 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.21 36.5 0.87 PtpAffx.22769.1.A1_at CV270424 hypothetical protein - 1e-1 At3g51330 aspartyl protease family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.1 99.0 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
9.0 98.7 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
7.3 98.2 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os03g0827500, orthologous to the query gene, PtpAffx.213954.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 Os03g0827500 At2g03260 - SPX, N-terminal domain containing protein 1e-4 At5g15330 SPX4 (SPX DOMAIN GENE 4) O.I. H.G. S.X.
0.36 44.0 Os03g0167500 At2g03260 - ReMembR-H2 protein JR702 (Fragment) 2e-8 At1g71980 protease-associated zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.33 38.8 Os02g0781700 At2g03260 - Conserved hypothetical protein 5e-5 At4g24590 unknown protein O.I. H.G. S.X.
0.22 19.4 Os02g0104200 At2g03260 - Conserved hypothetical protein 9e-10 At4g25670 unknown protein O.I. H.G. S.X.
0.14 9.3 Os04g0398600 At2g03260 - - 3e-32 At5g61840 GUT1 O.I. H.G. S.X.
0.05 2.5 Os07g0232200 At2g03260 - Cytochrome b5 domain containing protein 4e-8 At5g09680 cytochrome b5 domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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