Co-expression analysis

Gene ID	PtpAffx.213916.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g54826: - (HF=9e-1)
Module size	6 genes
NF	0.63
%ile	92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.88	PtpAffx.213916.1.S1_at	pmrna27132	hypothetical protein	-	9e-1	At3g54826	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.88	PtpAffx.209441.1.S1_at	pmrna18703	hypothetical protein	-	2e-3	At3g10580	myb family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.210983.1.S1_at	pmrna21573	hypothetical protein	-	4e-3	Atcg00330	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.32509.1.S1_at	CK112880	-	-	4e+0	At5g65810	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.88	PtpAffx.217976.1.S1_x_at	pmrna33465	hypothetical protein	-	5e-1	At5g52740	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.89	PtpAffx.209471.1.S1_at	pmrna18781	hypothetical protein	-	2e-1	At5g67590	FRO1 (FROSTBITE1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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