Co-expression analysis

Gene ID PtpAffx.213875.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g41890: GDSL-motif lipase/hydrolase family protein (HF=2e-1)
Module size 6 genes
NF 0.05
%ile 10.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.81PtpAffx.213875.1.S1_atpmrna27062hypothetical protein-2e-1At5g41890GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.4067.00.84PtpAffx.225905.1.S1_atpmrna45553hypothetical protein-3e-2At2g03060DNA binding / transcription factorO.I.H.G.S.X.
0.058.30.82Ptp.543.1.A1_atCK088475--4e+0At3g09490chloroplast lumen common family proteinO.I.H.G.S.X.
0.046.90.85PtpAffx.216803.1.S1_atpmrna31830hypothetical protein-4e-4At5g01860zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.035.20.80PtpAffx.203077.1.S1_atpmrna6091hypothetical protein-2e-1At4g08330unknown proteinO.I.H.G.S.X.
0.023.60.84PtpAffx.201423.1.S1_atpmrna2810hypothetical protein-3e-10At3g53750ACT3 (actin 3)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4369.70.85PtpAffx.203433.1.S1_atpmrna6841cytochrome P450-2e-1At5g09970CYP78A7O.I.H.G.S.X.
0.3661.60.85PtpAffx.213800.1.S1_atpmrna26936hypothetical protein-2e-5At5g60440AGL62 (Agamous-like 62)O.I.H.G.S.X.
0.2340.50.82PtpAffx.225243.1.S1_s_atpmrna44443hypothetical protein-6e-1At4g10160zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2238.30.83PtpAffx.221616.1.S1_atpmrna38589hypothetical protein-4e+0At5g25210unknown proteinO.I.H.G.S.X.
0.2238.30.88PtpAffx.209471.1.S1_atpmrna18781hypothetical protein-2e-1At5g67590FRO1 (FROSTBITE1)O.I.H.G.S.X.
0.2034.60.84Ptp.7508.1.S1_atCK109400--4e+0At2g16668unknown proteinO.I.H.G.S.X.
0.1932.70.81PtpAffx.209872.1.S1_x_atpmrna19450hypothetical protein-2e-2At1g29750RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1)O.I.H.G.S.X.
0.1932.70.83PtpAffx.119159.1.A1_atDN490496--4e+0At2g30730serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.1830.80.76PtpAffx.225579.1.S1_atpmrna45022hypothetical protein-9e-3At2g44810DAD1 (DEFECTIVE ANTHER DEHISCENCE 1)O.I.H.G.S.X.
0.1729.10.86PtpAffx.86522.1.S1_atBU882907--4e+0At4g38370phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.389.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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