Co-expression analysis

Gene ID	PtpAffx.213875.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g41890: GDSL-motif lipase/hydrolase family protein (HF=2e-1)
Module size	6 genes
NF	0.05
%ile	10.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.81	PtpAffx.213875.1.S1_at	pmrna27062	hypothetical protein	-	2e-1	At5g41890	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.84	PtpAffx.225905.1.S1_at	pmrna45553	hypothetical protein	-	3e-2	At2g03060	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.82	Ptp.543.1.A1_at	CK088475	-	-	4e+0	At3g09490	chloroplast lumen common family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.85	PtpAffx.216803.1.S1_at	pmrna31830	hypothetical protein	-	4e-4	At5g01860	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.80	PtpAffx.203077.1.S1_at	pmrna6091	hypothetical protein	-	2e-1	At4g08330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.84	PtpAffx.201423.1.S1_at	pmrna2810	hypothetical protein	-	3e-10	At3g53750	ACT3 (actin 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28646.1.S1_x_at, orthologous to the query gene, PtpAffx.213875.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	Ta.28646.1.S1_x_at	At5g41890	-	-	3e+0	At5g54560	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	TaAffx.17013.2.S1_x_at	At5g41890	-	-	1e+0	At4g10250	ATHSP22.0	O.I.	H.G.	S.X.	Please select
0.62	82.3	Ta.4736.1.A1_at	At5g41890	-	-	6e+0	At1g54230	DNA binding	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.13966.2.S1_s_at	At5g41890	-	-	2e-1	At5g09750	HEC3 (HECATE 3)	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.4674.1.S1_x_at	At5g41890	-	-	2e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.29444.2.S1_a_at	At5g41890	-	-	4e-2	At3g55050	serine/threonine protein phosphatase 2C (PP2C6)	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.13803.3.S1_x_at	At5g41890	-	-	2e+0	At2g29920	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	TaAffx.48658.1.S1_x_at	At5g41890	-	-	2e+0	At5g17900	-	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.7991.3.S1_at	At5g41890	-	-	8e-1	At3g17980	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.7991.3.S1_x_at	At5g41890	-	-	8e-1	At3g17980	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.29444.2.S1_s_at	At5g41890	-	-	4e-2	At3g55050	serine/threonine protein phosphatase 2C (PP2C6)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.13803.1.S1_x_at	At5g41890	-	-	3e-2	At1g73630	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.4674.1.S1_s_at	At5g41890	-	-	2e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.22757.1.S1_s_at	At5g41890	-	-	1e-4	At1g11700	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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