CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.213875.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g41890: GDSL-motif lipase/hydrolase family protein (HF=2e-1)

Module size 6 genes

NF 0.05

%ile 10.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 0.81 PtpAffx.213875.1.S1_at pmrna27062 hypothetical protein - 2e-1 At5g41890 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.40 67.0 0.84 PtpAffx.225905.1.S1_at pmrna45553 hypothetical protein - 3e-2 At2g03060 DNA binding / transcription factor O.I. H.G. S.X.
0.05 8.3 0.82 Ptp.543.1.A1_at CK088475 - - 4e+0 At3g09490 chloroplast lumen common family protein O.I. H.G. S.X.
0.04 6.9 0.85 PtpAffx.216803.1.S1_at pmrna31830 hypothetical protein - 4e-4 At5g01860 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.03 5.2 0.80 PtpAffx.203077.1.S1_at pmrna6091 hypothetical protein - 2e-1 At4g08330 unknown protein O.I. H.G. S.X.
0.02 3.6 0.84 PtpAffx.201423.1.S1_at pmrna2810 hypothetical protein - 3e-10 At3g53750 ACT3 (actin 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the rice gene, Os07g0508400, orthologous to the query gene, PtpAffx.213875.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 Os07g0508400 At5g41890 - - 1e+0 At5g01750 unknown protein O.I. H.G. S.X.
0.69 87.9 Os12g0506600 At5g41890 - Hypothetical protein 7e-2 At2g35360 ubiquitin family protein O.I. H.G. S.X.
0.56 76.3 Os04g0472000 At5g41890 - - 5e+1 At5g45490 disease resistance protein-related O.I. H.G. S.X.
0.55 73.7 Os03g0340300 At5g41890 - Hypothetical protein 7e-3 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.55 73.7 Os10g0424100 At5g41890 - BTB/POZ domain containing protein 7e+0 At3g24506 unknown protein O.I. H.G. S.X.
0.50 68.0 Os03g0266500 At5g41890 - - 3e+0 At2g11890 adenylate cyclase O.I. H.G. S.X.
0.46 60.9 Os07g0584666 At5g41890 - - 5e+0 At3g32180 unknown protein O.I. H.G. S.X.
0.42 53.9 Os12g0473400 At5g41890 - - 2e+0 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) O.I. H.G. S.X.
0.41 52.4 Os05g0335100 At5g41890 - Conserved hypothetical protein 3e+0 At4g14010 RALFL32 (ralf-like 32) O.I. H.G. S.X.
0.38 46.9 Os07g0416700 At5g41890 - - 5e+0 At5g18180 Gar1 RNA-binding region family protein O.I. H.G. S.X.
0.29 31.1 Os08g0445400 At5g41890 - - 3e+0 At3g61500 unknown protein O.I. H.G. S.X.
0.29 31.1 Os02g0512500 At5g41890 - - 7e+0 At5g12043 unknown protein O.I. H.G. S.X.
0.27 27.5 Os02g0688100 At5g41890 - - 3e+0 At3g63310 glutamate binding O.I. H.G. S.X.
0.13 8.2 Os07g0113100 At5g41890 - - 1e+0 At2g06520 PSBX (photosystem II subunit X) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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