CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.213875.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g41890: GDSL-motif lipase/hydrolase family protein (HF=2e-1)

Module size 6 genes

NF 0.05

%ile 10.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 0.81 PtpAffx.213875.1.S1_at pmrna27062 hypothetical protein - 2e-1 At5g41890 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.40 67.0 0.84 PtpAffx.225905.1.S1_at pmrna45553 hypothetical protein - 3e-2 At2g03060 DNA binding / transcription factor O.I. H.G. S.X.
0.05 8.3 0.82 Ptp.543.1.A1_at CK088475 - - 4e+0 At3g09490 chloroplast lumen common family protein O.I. H.G. S.X.
0.04 6.9 0.85 PtpAffx.216803.1.S1_at pmrna31830 hypothetical protein - 4e-4 At5g01860 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.03 5.2 0.80 PtpAffx.203077.1.S1_at pmrna6091 hypothetical protein - 2e-1 At4g08330 unknown protein O.I. H.G. S.X.
0.02 3.6 0.84 PtpAffx.201423.1.S1_at pmrna2810 hypothetical protein - 3e-10 At3g53750 ACT3 (actin 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM362887 Clone1979_LPI5_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4 90.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3 89.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g41890, orthologous to the query gene, PtpAffx.213875.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At5g41890 834194 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;PBOFM O.I. H.G. S.X.
0.80 89.8 At5g40940 834095 FLA20 (PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20) F:molecular_function unknown;P:unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.67 81.6 At2g31210 817677 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFVA O.I. H.G. S.X.
0.40 50.8 At1g73050 843636 (R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative F:oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cyanide biosynthetic process, defense response;C:endomembrane system;OBFMPVA O.I. H.G. S.X.
0.33 38.1 At5g24820 832551 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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