Co-expression analysis

Gene ID	PtpAffx.213753.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g79620: leucine-rich repeat transmembrane protein kinase, putative (HF=5e-25)
Module size	9 genes
NF	0.59
%ile	89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.92	PtpAffx.213753.1.S1_s_at	pmrna26859	hypothetical protein	-	5e-25	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	0.96	PtpAffx.143.1.S1_at	CF228932	hypothetical protein	-	3e-5	At5g40720	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.96	Ptp.2656.1.S1_at	CV256702	hypothetical protein	-	7e-7	At2g40270	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.74	93.8	0.94	PtpAffx.207972.1.S1_s_at	pmrna15829	-	-	7e-5	At1g13635	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.96	PtpAffx.201753.1.S1_at	pmrna3492	hypothetical protein	-	7e-1	At1g67170	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	0.96	PtpAffx.164036.2.S1_at	CV230947	laccase 1c /// laccase 1d	-	3e-11	At2g38080	IRX12 (IRREGULAR XYLEM 12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.97	PtpAffx.7536.3.A1_a_at	CV227608	hypothetical protein	-	5e+0	At5g35526	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.96	PtpAffx.70214.1.A1_s_at	CV227234	hypothetical protein	-	2e+0	At2g42820	HVA22F (HVA22-LIKE PROTEIN F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.97	PtpAffx.202560.1.S1_at	pmrna5131	leucine-rich repeat transmembrane protein	-	7e-5	At3g17840	RLK902	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	99.4	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
11.0	99.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
10.5	99.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.4	82.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.3	81.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.2	79.6	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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