Co-expression analysis

Gene ID PtpAffx.213729.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g29033: - (HF=5e+0)
Module size 6 genes
NF 0.38
%ile 65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.92PtpAffx.213729.1.S1_atpmrna26794hypothetical protein-5e+0At4g29033-O.I.H.G.S.X.
0.6791.10.91PtpAffx.63320.1.A1_atCV244754--1e-1At5g64420DNA polymerase V familyO.I.H.G.S.X.
0.3863.70.92PtpAffx.24700.1.A1_atCV249721hypothetical protein-8e-2At4g13940MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)O.I.H.G.S.X.
0.3357.50.92PtpAffx.217755.1.S1_atpmrna33144hypothetical protein-6e+0At2g06530VPS2.1O.I.H.G.S.X.
0.2543.60.94PtpAffx.205970.1.S1_atpmrna11840hypothetical protein-8e-1At5g09750HEC3 (HECATE 3)O.I.H.G.S.X.
0.1423.50.92PtpAffx.210427.1.S1_atpmrna20477hypothetical protein-1e+0At3g05710SYP43 (SYNTAXIN OF PLANTS 43)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.998.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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