Co-expression analysis

Gene ID	PtpAffx.213729.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g29033: - (HF=5e+0)
Module size	6 genes
NF	0.38
%ile	65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.92	PtpAffx.213729.1.S1_at	pmrna26794	hypothetical protein	-	5e+0	At4g29033	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.91	PtpAffx.63320.1.A1_at	CV244754	-	-	1e-1	At5g64420	DNA polymerase V family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.92	PtpAffx.24700.1.A1_at	CV249721	hypothetical protein	-	8e-2	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.92	PtpAffx.217755.1.S1_at	pmrna33144	hypothetical protein	-	6e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.94	PtpAffx.205970.1.S1_at	pmrna11840	hypothetical protein	-	8e-1	At5g09750	HEC3 (HECATE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.92	PtpAffx.210427.1.S1_at	pmrna20477	hypothetical protein	-	1e+0	At3g05710	SYP43 (SYNTAXIN OF PLANTS 43)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.9	98.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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