CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.213720.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g51610: unknown protein (HF=9e-9)

Module size 6 genes

NF 0.43

%ile 71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.92 PtpAffx.213720.1.S1_at pmrna26774 hypothetical protein - 9e-9 At3g51610 unknown protein O.I. H.G. S.X.
0.55 82.2 0.93 PtpAffx.70456.1.A1_at CK090706 hypothetical protein - 2e+0 At3g58600 - O.I. H.G. S.X.
0.50 78.6 0.92 PtpAffx.53314.1.A1_at CV229793 hypothetical protein - 7e-2 At1g14450 unknown protein O.I. H.G. S.X.
0.36 61.6 0.93 PtpAffx.61388.1.A1_at BP935694 hypothetical protein - 1e+0 At5g02770 unknown protein O.I. H.G. S.X.
0.29 50.5 0.93 PtpAffx.87019.1.A1_at BP935009 hypothetical protein - 9e-14 At5g19390 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein O.I. H.G. S.X.
0.17 29.1 0.92 PtpAffx.40711.1.A1_a_at DN496741 hypothetical protein - 3e-4 At1g53040 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.87	PtpAffx.214149.1.S1_at	pmrna27532	hypothetical protein	-	3e-37	At2g25737	unknown protein	O.I.	H.G.	S.X.
0.60	86.0	0.81	PtpAffx.221241.1.S1_s_at	pmrna37982	hypothetical protein	-	1e+0	At2g35480	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.89	PtpAffx.222153.1.S1_at	pmrna39394	hypothetical protein	-	3e-2	Atmg00030	-	O.I.	H.G.	S.X.
0.50	78.6	0.90	PtpAffx.6526.1.S1_a_at	CV268340	hypothetical protein	-	2e-34	At5g08580	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.50	78.6	0.91	PtpAffx.33750.1.A1_at	CV241728	hypothetical protein	-	2e-16	At5g65470	unknown protein	O.I.	H.G.	S.X.
0.48	75.4	0.86	Ptp.5428.1.S1_at	CV250257	hypothetical protein	-	3e-9	At5g54110	ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED)	O.I.	H.G.	S.X.
0.44	71.9	0.85	PtpAffx.120427.1.A1_at	CV281080	-	-	2e+0	At3g56170	CAN (CA-2+ DEPENDENT NUCLEASE)	O.I.	H.G.	S.X.
0.44	71.9	0.86	PtpAffx.16285.1.A1_at	DN491916	-	-	3e+0	At5g03345	-	O.I.	H.G.	S.X.
0.44	71.9	0.89	PtpAffx.66224.1.S1_s_at	CK114155	hypothetical protein	-	3e-3	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.
0.43	69.7	0.84	PtpAffx.44101.1.A1_at	CV244844	-	-	1e+1	At5g48500	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.89	PtpAffx.206020.1.S1_at	pmrna11930	hypothetical protein	-	1e-5	At5g13750	ZIFL1 (ZINC INDUCED FACILITATOR-like 1)	O.I.	H.G.	S.X.
0.32	55.2	0.87	PtpAffx.692.3.A1_at	CV275152	tubulin alpha-5 chain	-	8e-157	At1g04820	TUA4	O.I.	H.G.	S.X.
0.29	50.5	0.88	PtpAffx.75615.1.A1_at	CV263263	-	-	1e+1	At5g56795	MT1B	O.I.	H.G.	S.X.
0.29	50.5	0.89	PtpAffx.975.3.S1_at	CV258790	-	-	1e-1	At3g03010	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.
0.27	47.1	0.88	PtpAffx.81806.1.A1_at	CV272653	-	-	2e+0	At2g40085	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.81	PtpAffx.220574.1.S1_at	pmrna36979	-	-	3e+0	At1g09815	POLD4 (POLYMERASE DELTA 4)	O.I.	H.G.	S.X.
0.25	43.6	0.85	PtpAffx.70153.1.A1_at	CV230079	-	-	5e-8	At1g17820	phosphoinositide binding	O.I.	H.G.	S.X.
0.25	43.6	0.86	PtpAffx.35569.1.S1_at	DN494567	-	-	1e+1	At4g05010	F-box family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.3 97.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage