Co-expression analysis

Gene ID	PtpAffx.213720.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g51610: unknown protein (HF=9e-9)
Module size	6 genes
NF	0.43
%ile	71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.92	PtpAffx.213720.1.S1_at	pmrna26774	hypothetical protein	-	9e-9	At3g51610	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	PtpAffx.70456.1.A1_at	CK090706	hypothetical protein	-	2e+0	At3g58600	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.53314.1.A1_at	CV229793	hypothetical protein	-	7e-2	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.61388.1.A1_at	BP935694	hypothetical protein	-	1e+0	At5g02770	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.93	PtpAffx.87019.1.A1_at	BP935009	hypothetical protein	-	9e-14	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.40711.1.A1_a_at	DN496741	hypothetical protein	-	3e-4	At1g53040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1619129_at, orthologous to the query gene, PtpAffx.213720.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1619129_at	At3g51610	hypothetical protein LOC100249981	-	4e-3	At3g51610	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1619995_at	At3g51610	hypothetical protein LOC100259910	-	7e-19	At4g36800	RCE1 (RUB1 CONJUGATING ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.63	84.3	1616360_at	At3g51610	hypothetical protein LOC100262084	-	8e-2	At1g07960	ATPDIL5-1 (PDI-like 5-1)	O.I.	H.G.	S.X.	Please select
0.61	83.2	1610475_at	At3g51610	hypothetical protein LOC100242577	-	1e-7	At4g20380	zinc finger protein (LSD1)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1616386_s_at	At3g51610	hypothetical protein LOC100244762	-	2e-35	At3g06860	MFP2 (MULTIFUNCTIONAL PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1608420_at	At3g51610	hypothetical protein LOC100247793	-	8e-86	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage