CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.213720.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g51610: unknown protein (HF=9e-9)

Module size 6 genes

NF 0.43

%ile 71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.92 PtpAffx.213720.1.S1_at pmrna26774 hypothetical protein - 9e-9 At3g51610 unknown protein O.I. H.G. S.X.
0.55 82.2 0.93 PtpAffx.70456.1.A1_at CK090706 hypothetical protein - 2e+0 At3g58600 - O.I. H.G. S.X.
0.50 78.6 0.92 PtpAffx.53314.1.A1_at CV229793 hypothetical protein - 7e-2 At1g14450 unknown protein O.I. H.G. S.X.
0.36 61.6 0.93 PtpAffx.61388.1.A1_at BP935694 hypothetical protein - 1e+0 At5g02770 unknown protein O.I. H.G. S.X.
0.29 50.5 0.93 PtpAffx.87019.1.A1_at BP935009 hypothetical protein - 9e-14 At5g19390 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein O.I. H.G. S.X.
0.17 29.1 0.92 PtpAffx.40711.1.A1_a_at DN496741 hypothetical protein - 3e-4 At1g53040 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.3 97.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the rice gene, Os05g0168400, orthologous to the query gene, PtpAffx.213720.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 Os05g0168400 At3g51610 - Conserved hypothetical protein 3e-1 At3g11400 eukaryotic translation initiation factor 3G / eIF3g O.I. H.G. S.X.
0.44 58.1 Os07g0246300 At3g51610 - Sec13p 3e+0 At4g18930 cyclic phosphodiesterase O.I. H.G. S.X.
0.44 58.1 Os08g0309300 At3g51610 - RER1A protein (AtRER1A) 6e-3 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.42 53.9 Os01g0253100 At3g51610 - Pto kinase interactor 1 6e-12 At4g02010 protein kinase family protein O.I. H.G. S.X.
0.41 52.4 Os03g0123600 At3g51610 - Molluscan rhodopsin C-terminal tail family protein 6e-29 At5g41390 - O.I. H.G. S.X.
0.41 52.4 Os05g0110600 At3g51610 - Rab5-interacting family protein 6e-3 At2g29020 Rab5-interacting family protein O.I. H.G. S.X.
0.39 48.3 Os02g0690700 At3g51610 - Clathrin adaptor complex, medium chain familyprotein 3e+0 At1g19770 ATPUP14 O.I. H.G. S.X.
0.39 48.3 Os06g0218100 At3g51610 - Hypothetical protein 2e-3 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.36 44.0 Os04g0678800 At3g51610 - - 2e-24 At3g52850 VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) O.I. H.G. S.X.
0.34 40.0 Os07g0194000 At3g51610 - Vesicle-associated membrane protein 721(AtVAMP721) (v-SNARE synaptobrevin 7B) (AtVAMP7B) 6e-35 At1g04750 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) O.I. H.G. S.X.
0.34 40.0 Os12g0207300 At3g51610 - Clathrin coat assembly protein AP17 (Clathrin coatassociated protein AP17) (Plasma membrane adaptor AP-2 17kDa protein) (HA2 17 kDa subunit) (Clathrin assemblyprotein 2 small chain) 9e-55 At1g47830 clathrin coat assembly protein, putative O.I. H.G. S.X.
0.33 38.8 Os02g0535400 At3g51610 - Rar1 2e-4 At5g51700 PBS2 (PPHB SUSCEPTIBLE 2) O.I. H.G. S.X.
0.33 38.8 Os03g0804300 At3g51610 - Huntingtin-interacting protein 14 6e-14 At3g60800 zinc finger (DHHC type) family protein O.I. H.G. S.X.
0.32 36.3 Os03g0145800 At3g51610 - Ankyrin repeat containing protein 9e-11 At3g09890 ankyrin repeat family protein O.I. H.G. S.X.
0.29 31.1 Os11g0181100 At3g51610 - Nonaspanin (TM9SF) family protein 2e-70 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.
0.29 31.1 Os12g0605400 At3g51610 - CROC-1-like protein (Fragment) 9e-12 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) O.I. H.G. S.X.
0.28 31.1 Os01g0708600 At3g51610 - Transport protein particle (TRAPP) component, Bet3family protein 5e-44 At5g58030 transport protein particle (TRAPP) component Bet3 family protein O.I. H.G. S.X.
0.23 21.2 Os08g0323000 At3g51610 - Conserved hypothetical protein 5e-5 At5g61970 signal recognition particle-related / SRP-related O.I. H.G. S.X.
0.23 21.2 Os03g0774200 At3g51610 - NADH-ubiquinone oxidoreductase subunit 8 (EC1.6.5.3) 2e-71 At1g79010 NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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