Co-expression analysis

Gene ID	PtpAffx.213720.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g51610: unknown protein (HF=9e-9)
Module size	6 genes
NF	0.43
%ile	71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.92	PtpAffx.213720.1.S1_at	pmrna26774	hypothetical protein	-	9e-9	At3g51610	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	PtpAffx.70456.1.A1_at	CK090706	hypothetical protein	-	2e+0	At3g58600	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.53314.1.A1_at	CV229793	hypothetical protein	-	7e-2	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	PtpAffx.61388.1.A1_at	BP935694	hypothetical protein	-	1e+0	At5g02770	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.93	PtpAffx.87019.1.A1_at	BP935009	hypothetical protein	-	9e-14	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.40711.1.A1_a_at	DN496741	hypothetical protein	-	3e-4	At1g53040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, Gma.2509.1.S1_at, orthologous to the query gene, PtpAffx.213720.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	Gma.2509.1.S1_at	At3g51610	-	-	1e-4	At3g51610	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.17803.1.S1_s_at	At3g51610	-	-	1e-21	At2g23930	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.6464.1.S1_s_at	At3g51610	-	-	4e-41	At2g19790	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.16860.1.S1_at	At3g51610	-	-	2e-3	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.10826.6.S1_x_at	At3g51610	-	-	6e-93	At5g55190	RAN3 (RAN GTPASE 3)	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.6739.1.S1_s_at	At3g51610	-	-	2e-58	At5g09920	NRPB4	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.4710.2.S1_x_at	At3g51610	-	-	3e-20	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.6337.1.S1_x_at	At3g51610	-	-	5e-31	At4g34555	40S ribosomal protein S25, putative	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.8005.2.S1_at	At3g51610	-	-	4e-67	At2g03120	ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.2905.1.S1_at	At3g51610	-	-	4e-172	At4g29040	RPT2a (regulatory particle AAA-ATPase 2a)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.745.1.S1_a_at	At3g51610	-	-	3e-11	At5g67590	FRO1 (FROSTBITE1)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.10826.2.S1_at	At3g51610	-	-	8e-9	At5g16130	40S ribosomal protein S7 (RPS7C)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.90058.1.S1_s_at	At3g51610	-	-	1e-9	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.2293.1.S1_at	At3g51610	-	-	3e-30	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.973.1.S1_a_at	At3g51610	-	-	1e-69	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.89272.1.A1_s_at	At3g51610	-	-	1e-34	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.5316.1.S1_at	At3g51610	-	-	1e-22	At3g15660	GRX4 (GLUTAREDOXIN 4)	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.4383.1.S1_a_at	At3g51610	-	-	9e-34	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.7097.1.S1_at	At3g51610	-	-	5e-47	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.7362.1.S1_at	At3g51610	-	-	1e-10	At5g10880	tRNA synthetase-related / tRNA ligase-related	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.4208.2.S1_at	At3g51610	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.3948.1.S1_at	At3g51610	-	-	2e-28	At2g46290	eukaryotic translation initiation factor 3 subunit 2, putative / eIF-3 beta, putative / eIF3i, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.89628.1.S1_s_at	At3g51610	triosephosphate isomerase	-	5e-13	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.11133.1.S1_s_at	At3g51610	-	-	2e-28	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.7801.1.S1_at	At3g51610	-	-	1e-35	At3g48750	CDC2 (CELL DIVISION CONTROL 2)	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.11223.1.S1_at	At3g51610	-	-	4e-169	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.92457.1.A1_s_at	At3g51610	-	-	8e-17	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.2708.1.S1_at	At3g51610	-	-	1e-82	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.7525.1.A1_at	At3g51610	-	-	1e-25	At1g73430	sec34-like family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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