CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.213720.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g51610: unknown protein (HF=9e-9)

Module size 6 genes

NF 0.43

%ile 71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.92 PtpAffx.213720.1.S1_at pmrna26774 hypothetical protein - 9e-9 At3g51610 unknown protein O.I. H.G. S.X.
0.55 82.2 0.93 PtpAffx.70456.1.A1_at CK090706 hypothetical protein - 2e+0 At3g58600 - O.I. H.G. S.X.
0.50 78.6 0.92 PtpAffx.53314.1.A1_at CV229793 hypothetical protein - 7e-2 At1g14450 unknown protein O.I. H.G. S.X.
0.36 61.6 0.93 PtpAffx.61388.1.A1_at BP935694 hypothetical protein - 1e+0 At5g02770 unknown protein O.I. H.G. S.X.
0.29 50.5 0.93 PtpAffx.87019.1.A1_at BP935009 hypothetical protein - 9e-14 At5g19390 pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein O.I. H.G. S.X.
0.17 29.1 0.92 PtpAffx.40711.1.A1_a_at DN496741 hypothetical protein - 3e-4 At1g53040 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.3 97.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.2 89.3 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g51610, orthologous to the query gene, PtpAffx.213720.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g51610 824324 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO O.I. H.G. S.X.
0.73 85.5 At5g10780 830945 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.61 76.7 At5g51510 835225 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.57 73.8 At3g15660 820809 GRX4 (GLUTAREDOXIN 4) F:metal ion binding;P:cell redox homeostasis;C:mitochondrion;OBMPFA O.I. H.G. S.X.
0.29 30.3 At4g12590 826872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, endoplasmic reticulum;MFOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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