Co-expression analysis

Gene ID PtpAffx.213645.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g80930: MIF4G domain-containing protein / MA3 domain-containing protein (HF=2e-61)
Module size 6 genes
NF 0.35
%ile 60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.86PtpAffx.213645.1.S1_atpmrna26652hypothetical protein-2e-61At1g80930MIF4G domain-containing protein / MA3 domain-containing proteinO.I.H.G.S.X.
0.4369.70.89PtpAffx.204367.1.S1_atpmrna8582hypothetical protein-1e-15At4g38220aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putativeO.I.H.G.S.X.
0.3559.70.88PtpAffx.212307.1.S1_s_atpmrna24134SW2/SNF2 family-like protein /// hypothetical protein /// hypothetical protein /// hypothetical protein-1e+0At5g38590F-box family proteinO.I.H.G.S.X.
0.3357.50.92PtpAffx.66913.1.A1_atCV260912hypothetical protein-2e-15At3g07180GPI transamidase component PIG-S-relatedO.I.H.G.S.X.
0.2747.10.92Ptp.2137.1.S1_atCV260207hypothetical protein-8e-21At5g42890SCP2 (STEROL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.1729.10.89PtpAffx.51765.1.A1_atCV239062--1e-45At3g03890FMN bindingO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.6GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.898.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.797.9GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.590.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328077Populus x canescens leaf control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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