Co-expression analysis

Gene ID PtpAffx.213475.1.S1_at
Gene name AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor
Homology with ArabidopsisSimilar to At3g52440: Dof-type zinc finger domain-containing protein (HF=7e-1)
Module size 6 genes
NF 0.04
%ile 10.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4067.00.86PtpAffx.213475.1.S1_atpmrna26347AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor-7e-1At3g52440Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.5380.50.84PtpAffx.9216.2.S1_a_atCV257352ABC transporter family protein-2e-5At5g02270ATNAP9O.I.H.G.S.X.
0.2543.60.89Ptp.2724.1.S1_s_atDN503650hypothetical protein-2e+0At3g06455splicing factor-relatedO.I.H.G.S.X.
0.1525.30.86PtpAffx.213476.1.S1_atpmrna26348AP2 domain-containing transcription factor-2e-29At2g28550RAP2.7 (RELATED TO AP2.7)O.I.H.G.S.X.
0.0812.90.87PtpAffx.88546.1.S1_s_atCV262083Cl-channel clc-7 /// Cl-channel clc-7-1e-25At5g49890CLC-C (CHLORIDE CHANNEL C)O.I.H.G.S.X.
0.012.20.88PtpAffx.151056.1.S1_atBI122111hypothetical protein-1e+0At3g53065beta-galactosidase/ sugar bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.0GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
7.398.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.797.9GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
5.497.0GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
5.196.8GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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