Co-expression analysis

Gene ID	PtpAffx.213415.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g17870: cold-shock DNA-binding family protein (HF=4e+0)
Module size	8 genes
NF	0.22
%ile	39.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.89	PtpAffx.213415.1.S1_at	pmrna26240	hypothetical protein	-	4e+0	At2g17870	cold-shock DNA-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.89	PtpAffx.3429.2.S1_at	DN491388	hypothetical protein	-	2e+0	At5g04700	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.88	PtpAffx.114218.1.A1_at	CV266727	hypothetical protein	-	8e-11	At1g02475	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.89	PtpAffx.217408.1.S1_at	pmrna32658	-	-	8e-5	At1g12920	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	PtpAffx.118894.1.S1_at	DN501750	hypothetical protein	-	1e+0	At5g50750	RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.89	PtpAffx.203710.1.S1_at	pmrna7342	hypothetical protein	-	3e-2	At4g05230	ubiquitin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.86769.1.A1_at	DN491418	-	-	5e-1	At1g18030	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.90	PtpAffx.450.2.S1_at	CV229392	-	-	2e-8	At4g27280	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.4	94.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.3	93.7	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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