Co-expression analysis

Gene ID	PtpAffx.213410.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g52480: unknown protein (HF=4e-1)
Module size	28 genes
NF	0.42
%ile	71.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	95.3	0.93	PtpAffx.213410.1.S1_s_at	pmrna26233	hypothetical protein	-	4e-1	At3g52480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.66	88.7	0.93	PtpAffx.120103.1.S1_at	CK105062	-	-	9e-1	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.94	PtpAffx.223147.1.S1_s_at	pmrna41005	nbs-lrr resistance protein	-	7e-1	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.94	PtpAffx.9806.2.A1_at	CV255306	-	-	8e-1	At2g19800	MIOX2 (MYO-INOSITOL OXYGENASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.95	PtpAffx.11149.1.A1_at	CV277685	-	-	4e-2	At1g31240	DNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.95	PtpAffx.19782.1.S1_at	DN493430	hypothetical protein	-	9e-3	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	Ptp.7161.1.S1_s_at	CV242429	hypothetical protein	-	5e-1	At5g01910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.95	PtpAffx.203042.1.S1_s_at	pmrna6024	hypothetical protein	-	4e-2	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.95	PtpAffx.64085.1.S1_at	DN486352	hypothetical protein	-	1e-2	At1g28380	NSL1 (necrotic spotted lesions 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.94	PtpAffx.220089.1.S1_s_at	pmrna36403	nbs-lrr resistance protein /// NBS resistance protein /// hypothetical protein	-	9e-2	At4g12830	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.94	PtpAffx.5580.3.S1_a_at	CX658777	hypothetical protein	-	4e-14	At1g30460	CPSF30	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.94	PtpAffx.214530.1.S1_at	pmrna28243	hypothetical protein	-	4e-1	At5g20550	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.95	PtpAffx.111009.1.S1_at	CX655295	hypothetical protein	-	4e-20	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.95	PtpAffx.144626.1.S1_at	BI071771	hypothetical protein	-	3e-33	At1g52980	GTP-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.144824.1.S1_at	BU808853	hypothetical protein	-	5e-2	At4g31000	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	Ptp.7085.1.S1_at	CV282567	hypothetical protein	-	1e-9	At3g22240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	PtpAffx.86848.1.S1_at	DN497301	hypothetical protein	-	8e-8	At2g44590	ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.95	PtpAffx.129030.1.S1_s_at	CK115249	hypothetical protein	-	7e-1	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.94	PtpAffx.98197.1.S1_s_at	BU887960	hypothetical protein	-	7e-2	At1g03410	2A6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.95	PtpAffx.5159.2.S1_at	CA821209	hypothetical protein	-	1e-12	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.95	PtpAffx.215077.1.S1_s_at	pmrna29042	hypothetical protein	-	2e-4	At5g17540	transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.249.692.A1_s_at	DN491523	-	-	8e-1	At3g43700	ATBPM6 (BTB-POZ and MATH domain 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.95	PtpAffx.130848.1.A1_at	BU865649	AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor	-	4e-1	At4g30450	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.67649.1.A1_at	DN490469	hypothetical protein	-	5e+0	At5g23908	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.94	Ptp.7908.1.S1_at	CV262985	hypothetical protein	-	1e+0	At5g44582	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.95	PtpAffx.92919.1.S1_at	AI164790	hypothetical protein	-	2e-1	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.94	PtpAffx.142163.1.S1_at	BU823956	-	-	1e+0	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	PtpAffx.212790.1.S1_at	pmrna25029	hypothetical protein	-	3e-51	At2g04940	scramblase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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