Co-expression analysis

Gene ID PtpAffx.213396.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g05680: EMB2016 (embryo defective 2016) (HF=2e-33)
Module size 10 genes
NF 0.60
%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4471.90.96PtpAffx.213396.1.S1_atpmrna26208hypothetical protein-2e-33At3g05680EMB2016 (embryo defective 2016)O.I.H.G.S.X.
0.7493.80.97PtpAffx.37724.1.A1_atCV241339hypothetical protein-8e-33At1g20960emb1507 (embryo defective 1507)O.I.H.G.S.X.
0.7493.80.97PtpAffx.144789.1.S1_atDN501676hypothetical protein-1e-71At3g03110XPO1BO.I.H.G.S.X.
0.6791.10.97PtpAffx.204530.1.S1_atpmrna8890hypothetical protein-9e-8At4g38600KAK (KAKTUS)O.I.H.G.S.X.
0.6791.10.97PtpAffx.218043.1.S1_s_atpmrna33555chromatin remodeling complex subunit /// chromatin remodeling complex subunit /// hypothetical protein-2e-113At3g06400CHR11 (CHROMATIN-REMODELING PROTEIN 11)O.I.H.G.S.X.
0.6791.10.97Ptp.8118.3.S1_atCV257922hypothetical protein-7e-12At4g30560ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9)O.I.H.G.S.X.
0.6388.10.97PtpAffx.70584.1.S1_s_atAJ771534hypothetical protein-6e-21At1g14610TWN2 (TWIN 2)O.I.H.G.S.X.
0.5984.90.97PtpAffx.65322.1.S1_s_atCX175346hypothetical protein-3e-75At5g06600UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)O.I.H.G.S.X.
0.5078.60.98PtpAffx.88869.1.A1_atCV248897hypothetical protein-2e-86At5g53480importin beta-2, putativeO.I.H.G.S.X.
0.3052.00.97Ptp.6439.1.S1_s_atBU874074hypothetical protein-4e-54At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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