Co-expression analysis

Gene ID	PtpAffx.213255.1.S1_s_at
Gene name	type-a response regulator
Homology with Arabidopsis	Similar to At2g41310: ATRR3 (RESPONSE REGULATOR 3) (HF=3e-37)
Module size	13 genes
NF	0.23
%ile	42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.87	PtpAffx.213255.1.S1_s_at	pmrna25930	type-a response regulator	-	3e-37	At2g41310	ATRR3 (RESPONSE REGULATOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.92	PtpAffx.200622.1.S1_x_at	pmrna1214	hypothetical protein	-	1e-1	At4g34730	ribosome-binding factor A family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.92	PtpAffx.54186.1.S1_at	CV264496	histidine phosphotransfer protein	-	5e-7	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.89	PtpAffx.212800.1.S1_at	pmrna25049	hypothetical protein	-	1e-4	At4g24670	TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.92	PtpAffx.225061.1.S1_s_at	pmrna44143	hypothetical protein	-	6e-33	At5g11380	DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.5701.2.S1_at	CV266177	-	-	2e-3	At4g25800	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	Ptp.4615.1.S1_at	CN523657	hypothetical protein	-	2e-21	At1g53730	SRF6 (STRUBBELIG-RECEPTOR FAMILY 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	PtpAffx.132467.1.S1_s_at	CB239543	hypothetical protein	-	6e-61	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.89	PtpAffx.223632.1.S1_s_at	pmrna41715	hypothetical protein	-	7e-26	At4g18905	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.91	Ptp.5775.1.S1_at	AI165616	hypothetical protein	-	3e-21	At5g62070	IQD23 (IQ-domain 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.92	PtpAffx.20200.1.S1_at	CV230243	hypothetical protein	-	2e-4	At1g69450	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.117432.1.S1_at	BU896010	hypothetical protein	-	3e-8	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.89	PtpAffx.222305.1.S1_s_at	pmrna39624	hypothetical protein	-	7e-1	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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