Co-expression analysis

Gene ID	PtpAffx.213051.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g26660: LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24) (HF=1e-11)
Module size	7 genes
NF	0.31
%ile	54.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.84	PtpAffx.213051.1.S1_x_at	pmrna25539	hypothetical protein	-	1e-11	At3g26660	LBD24 (LOB DOMAIN-CONTAINING PROTEIN 24)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.82	PtpAffx.205176.1.S1_at	pmrna10250	hypothetical protein	-	5e-1	At2g04480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.82	PtpAffx.204387.1.S1_at	pmrna8612	hypothetical protein	-	9e+0	At5g25640	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.84	PtpAffx.203994.1.S1_at	pmrna7881	hypothetical protein	-	1e+0	At2g28355	LCR5 (Low-molecular-weight cysteine-rich 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.83	PtpAffx.218682.1.S1_at	pmrna34389	hypothetical protein	-	1e+0	At3g19400	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.82	PtpAffx.223288.1.S1_at	pmrna41210	-	-	4e-1	At1g14470	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.82	PtpAffx.206917.1.S1_at	pmrna13735	hypothetical protein	-	2e+0	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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