Co-expression analysis

Gene ID	PtpAffx.213045.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g45650: AGL6 (AGAMOUS-LIKE 6) (HF=5e-24)
Module size	6 genes
NF	0.04
%ile	9.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.35	59.7	0.76	PtpAffx.213045.1.S1_at	pmrna25528	hypothetical protein	-	5e-24	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.78	PtpAffx.200123.1.S1_at	pmrna225	hypothetical protein	-	8e+0	At4g00355	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.76	PtpAffx.201229.1.S1_x_at	pmrna2442	hypothetical protein	-	4e-13	At2g14210	AGL44 (AGAMOUS-LIKE 44)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.76	PtpAffx.211622.1.S1_at	pmrna22777	-	-	9e-6	At1g35580	CINV1 (cytosolic invertase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.77	PtpAffx.207952.1.S1_at	pmrna15780	hypothetical protein	-	2e+0	At1g56085	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.76	PtpAffx.108092.1.A1_at	CV254682	-	-	3e+0	At1g02610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	99.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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