CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.212939.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g07380: unknown protein (HF=2e-8)

Module size 6 genes

NF 0.36

%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.90 PtpAffx.212939.1.S1_at pmrna25319 hypothetical protein - 2e-8 At5g07380 unknown protein O.I. H.G. S.X.
0.40 67.0 0.90 PtpAffx.202991.1.S1_at pmrna5919 hypothetical protein - 6e-1 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) O.I. H.G. S.X.
0.40 67.0 0.90 PtpAffx.207643.1.S1_at pmrna15162 hypothetical protein - 3e-1 At3g57390 AGL18 O.I. H.G. S.X.
0.29 50.5 0.90 PtpAffx.219686.1.S1_at pmrna35660 cytochrome P450 - 1e+0 At3g14650 CYP72A11 O.I. H.G. S.X.
0.23 40.5 0.89 PtpAffx.225864.1.S1_at pmrna45498 hypothetical protein - 1e+0 At4g16500 cysteine protease inhibitor family protein / cystatin family protein O.I. H.G. S.X.
0.21 36.5 0.89 PtpAffx.203936.1.S1_at pmrna7766 hypothetical protein - 7e-1 At3g06740 zinc finger (GATA type) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.0 99.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.3 98.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.0 95.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8 86.4 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g07380, orthologous to the query gene, PtpAffx.212939.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g07380 830629 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP O.I. H.G. S.X.
0.33 38.1 At5g09950 830856 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POFMB O.I. H.G. S.X.
0.11 4.1 At3g26480 822253 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:unknown;BMFOPA O.I. H.G. S.X.
0.06 1.4 At4g14850 827142 LOI1 (lovastatin insensitive 1) Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase. O.I. H.G. S.X.
0.06 1.4 At3g16710 820923 - F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. H.G. S.X.
0.04 0.9 At4g11590 826764 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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