Co-expression analysis

Gene ID	PtpAffx.212921.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g48860: unknown protein (HF=4e-27)
Module size	6 genes
NF	0.29
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.94	PtpAffx.212921.1.S1_s_at	pmrna25278	hypothetical protein	-	4e-27	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	Ptp.7883.1.S1_at	DN500687	hypothetical protein	-	5e-13	At4g24990	ATGP4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.28706.1.S1_at	CK317869	hypothetical protein	-	1e-70	At1g17280	UBC34 (ubiquitin-conjugating enzyme 34)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	PtpAffx.74515.1.A1_at	CX659834	hypothetical protein	-	2e-21	At5g05310	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	PtpAffx.65137.1.S1_at	DN493780	-	-	5e-3	At3g15920	phox (PX) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.95	PtpAffx.11426.1.A1_at	CV263606	hypothetical protein	-	9e-15	At1g02080	transcriptional regulator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	89.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327359	Populus balsamifera_20071015_Seedling_continuous_light_6d_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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