CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.212850.1.S1_at

Gene name lysine/histidine transporter
Homology with Arabidopsis Similar to At5g40780: LHT1 (HF=9e-28)

Module size 6 genes

NF 0.04

%ile 8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.86 PtpAffx.212850.1.S1_at pmrna25146 lysine/histidine transporter - 9e-28 At5g40780 LHT1 O.I. H.G. S.X.
0.21 36.5 0.86 PtpAffx.207501.1.S1_at pmrna14897 glycosyltransferase - 1e-39 At3g25140 QUA1 (QUASIMODO 1) O.I. H.G. S.X.
0.07 11.6 0.89 PtpAffx.1172.2.A1_at CV232336 - - 1e+0 At1g48780 unknown protein O.I. H.G. S.X.
0.04 6.9 0.89 PtpAffx.214837.1.S1_at pmrna28728 white-brown-complex ABC transporter family - 4e-3 At4g27420 ABC transporter family protein O.I. H.G. S.X.
0.02 3.6 0.87 PtpAffx.61161.1.A1_at CV240842 hypothetical protein - 5e+0 At5g22190 unknown protein O.I. H.G. S.X.
0.02 3.6 0.86 PtpAffx.154543.1.A1_a_at CV268890 - - 5e-24 At4g34490 ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.77	PtpAffx.221388.1.S1_at	pmrna38259	hypothetical protein	-	5e-8	At4g14350	protein kinase family protein	O.I.	H.G.	S.X.
0.50	78.6	0.80	PtpAffx.223025.1.S1_at	pmrna40809	-	-	3e-1	At4g01340	CHP-rich zinc finger protein-related	O.I.	H.G.	S.X.
0.50	78.6	0.81	PtpAffx.200417.1.S1_at	pmrna841	hypothetical protein	-	1e+0	At1g55480	binding / protein binding	O.I.	H.G.	S.X.
0.36	61.6	0.83	PtpAffx.20626.2.S1_a_at	CK097056	hypothetical protein	-	2e-9	At1g27330	-	O.I.	H.G.	S.X.
0.33	57.5	0.83	PtpAffx.210988.1.S1_at	pmrna21579	hypothetical protein	-	1e-1	At4g00820	iqd17 (IQ-domain 17)	O.I.	H.G.	S.X.
0.31	53.7	0.80	PtpAffx.223452.1.S1_at	pmrna41473	hypothetical protein	-	3e+0	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.
0.29	50.5	0.81	PtpAffx.213796.1.S1_at	pmrna26929	hypothetical protein	-	2e-1	At4g30640	F-box family protein (FBL19)	O.I.	H.G.	S.X.
0.27	47.1	0.79	PtpAffx.216856.1.S1_at	pmrna31897	-	-	2e+1	At5g43200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.21	36.5	0.86	PtpAffx.204750.1.S1_at	pmrna9346	amino acid permease	-	2e-1	At1g44100	AAP5	O.I.	H.G.	S.X.
0.20	34.6	0.82	PtpAffx.201904.1.S1_at	pmrna3796	hypothetical protein	-	1e-4	At1g22110	structural constituent of ribosome	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.4 97.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage