Co-expression analysis

Gene ID PtpAffx.212850.1.S1_at
Gene name lysine/histidine transporter
Homology with ArabidopsisSimilar to At5g40780: LHT1 (HF=9e-28)
Module size 6 genes
NF 0.04
%ile 8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.86PtpAffx.212850.1.S1_atpmrna25146lysine/histidine transporter-9e-28At5g40780LHT1O.I.H.G.S.X.
0.2136.50.86PtpAffx.207501.1.S1_atpmrna14897glycosyltransferase-1e-39At3g25140QUA1 (QUASIMODO 1)O.I.H.G.S.X.
0.0711.60.89PtpAffx.1172.2.A1_atCV232336--1e+0At1g48780unknown proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.214837.1.S1_atpmrna28728white-brown-complex ABC transporter family-4e-3At4g27420ABC transporter family proteinO.I.H.G.S.X.
0.023.60.87PtpAffx.61161.1.A1_atCV240842hypothetical protein-5e+0At5g22190unknown proteinO.I.H.G.S.X.
0.023.60.86PtpAffx.154543.1.A1_a_atCV268890--5e-24At4g34490ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os08g0127100, orthologous to the query gene, PtpAffx.212850.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6181.2Os08g0127100At5g40780-Lysine and histidine specific transporter3e-19At5g40780LHT1O.I.H.G.S.X.
0.7793.1Os04g0503600At5g40780-Protein kinase domain containing protein2e+0At5g58940CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1)O.I.H.G.S.X.
0.6079.7Os11g0703400At5g40780-Snf7 family protein2e-19At2g06530VPS2.1O.I.H.G.S.X.
0.5371.3Os04g0451900At5g40780-Protein phosphatase 2C-like domain containingprotein6e-11At1g22280protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.5068.0Os02g0475300At5g40780-Membrane attack complexcomponent/perforin/complement C9 family protein5e+0At5g08590SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)O.I.H.G.S.X.
0.4458.1Os02g0173800At5g40780-Eukaryotic protein of unknown function DUF284family protein2e-8At1g16360LEM3 (ligand-effect modulator 3) family protein / CDC50 family proteinO.I.H.G.S.X.
0.2219.4Os01g0959800At5g40780-Phosphatidylserine decarboxylase1e-9At4g25970PSD3 (phosphatidylserine decarboxylase 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage