Co-expression analysis

Gene ID	PtpAffx.212850.1.S1_at
Gene name	lysine/histidine transporter
Homology with Arabidopsis	Similar to At5g40780: LHT1 (HF=9e-28)
Module size	6 genes
NF	0.04
%ile	8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.86	PtpAffx.212850.1.S1_at	pmrna25146	lysine/histidine transporter	-	9e-28	At5g40780	LHT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.86	PtpAffx.207501.1.S1_at	pmrna14897	glycosyltransferase	-	1e-39	At3g25140	QUA1 (QUASIMODO 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.89	PtpAffx.1172.2.A1_at	CV232336	-	-	1e+0	At1g48780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.89	PtpAffx.214837.1.S1_at	pmrna28728	white-brown-complex ABC transporter family	-	4e-3	At4g27420	ABC transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.87	PtpAffx.61161.1.A1_at	CV240842	hypothetical protein	-	5e+0	At5g22190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.86	PtpAffx.154543.1.A1_a_at	CV268890	-	-	5e-24	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	97.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.46129.1.S1_at, orthologous to the query gene, PtpAffx.212850.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	GmaAffx.46129.1.S1_at	At5g40780	-	-	5e-6	At5g40780	LHT1	O.I.	H.G.	S.X.	Please select
0.86	93.0	Gma.3831.1.S1_at	At5g40780	-	-	2e-1	At1g18790	RWP-RK domain-containing protein	O.I.	H.G.	S.X.	Please select
0.77	90.3	GmaAffx.93545.1.S1_at	At5g40780	-	-	2e+0	At3g17668	ENA (ENHANCER OF ATNSI ACTIVITY)	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.82269.1.S1_s_at	At5g40780	-	-	1e-2	At1g68190	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.672.1.A1_s_at	At5g40780	-	-	9e+0	At5g27020	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.3562.1.S1_s_at	At5g40780	-	-	7e-3	At2g40370	LAC5 (laccase 5)	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.90357.1.S1_s_at	At5g40780	-	-	1e+0	At4g33467	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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