Co-expression analysis

Gene ID PtpAffx.212850.1.S1_at
Gene name lysine/histidine transporter
Homology with ArabidopsisSimilar to At5g40780: LHT1 (HF=9e-28)
Module size 6 genes
NF 0.04
%ile 8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.86PtpAffx.212850.1.S1_atpmrna25146lysine/histidine transporter-9e-28At5g40780LHT1O.I.H.G.S.X.
0.2136.50.86PtpAffx.207501.1.S1_atpmrna14897glycosyltransferase-1e-39At3g25140QUA1 (QUASIMODO 1)O.I.H.G.S.X.
0.0711.60.89PtpAffx.1172.2.A1_atCV232336--1e+0At1g48780unknown proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.214837.1.S1_atpmrna28728white-brown-complex ABC transporter family-4e-3At4g27420ABC transporter family proteinO.I.H.G.S.X.
0.023.60.87PtpAffx.61161.1.A1_atCV240842hypothetical protein-5e+0At5g22190unknown proteinO.I.H.G.S.X.
0.023.60.86PtpAffx.154543.1.A1_a_atCV268890--5e-24At4g34490ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.596.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.886.4GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g40780, orthologous to the query gene, PtpAffx.212850.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5570.6At5g40780834078LHT1Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.O.I.H.G.S.X.
0.5065.3At5g37600833738ATGSR1encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.H.G.S.X.
0.2522.6At4g13510826983AMT1Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake.O.I.H.G.S.X.
0.2217.5At1g34750840379protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.061.4At4g23010828400UDP-galactose transporter-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOABO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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