CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.212850.1.S1_at

Gene name lysine/histidine transporter
Homology with Arabidopsis Similar to At5g40780: LHT1 (HF=9e-28)

Module size 6 genes

NF 0.04

%ile 8.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.86 PtpAffx.212850.1.S1_at pmrna25146 lysine/histidine transporter - 9e-28 At5g40780 LHT1 O.I. H.G. S.X.
0.21 36.5 0.86 PtpAffx.207501.1.S1_at pmrna14897 glycosyltransferase - 1e-39 At3g25140 QUA1 (QUASIMODO 1) O.I. H.G. S.X.
0.07 11.6 0.89 PtpAffx.1172.2.A1_at CV232336 - - 1e+0 At1g48780 unknown protein O.I. H.G. S.X.
0.04 6.9 0.89 PtpAffx.214837.1.S1_at pmrna28728 white-brown-complex ABC transporter family - 4e-3 At4g27420 ABC transporter family protein O.I. H.G. S.X.
0.02 3.6 0.87 PtpAffx.61161.1.A1_at CV240842 hypothetical protein - 5e+0 At5g22190 unknown protein O.I. H.G. S.X.
0.02 3.6 0.86 PtpAffx.154543.1.A1_a_at CV268890 - - 5e-24 At4g34490 ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.4 97.0 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2 89.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9 87.2 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8 86.4 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g40780, orthologous to the query gene, PtpAffx.212850.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.55 70.6 At5g40780 834078 LHT1 Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll. O.I. H.G. S.X.
0.50 65.3 At5g37600 833738 ATGSR1 encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. H.G. S.X.
0.25 22.6 At4g13510 826983 AMT1 Encodes a plasma membrane localized ammonium transporter. Contains a cytosolic trans-activation domain essential for ammonium uptake. O.I. H.G. S.X.
0.22 17.5 At1g34750 840379 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVA O.I. H.G. S.X.
0.06 1.4 At4g23010 828400 UDP-galactose transporter-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOAB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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