Co-expression analysis

Gene ID PtpAffx.212735.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g37295: unknown protein (HF=1e+0)
Module size 9 genes
NF 0.11
%ile 22.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4673.70.86PtpAffx.212735.1.S1_atpmrna24908hypothetical protein-1e+0At4g37295unknown proteinO.I.H.G.S.X.
0.2645.20.86PtpAffx.209521.1.S1_atpmrna18865hypothetical protein-2e-2At1g12380unknown proteinO.I.H.G.S.X.
0.2543.60.90PtpAffx.210650.1.S1_atpmrna20890hypothetical protein-3e-15At4g24900unknown proteinO.I.H.G.S.X.
0.1423.50.89PtpAffx.71553.1.A1_atCK090344--2e+0At3g10240F-box protein-relatedO.I.H.G.S.X.
0.1118.10.87PtpAffx.222502.1.S1_atpmrna39975hypothetical protein-4e-3At3g57950unknown proteinO.I.H.G.S.X.
0.1016.30.87Ptp.7005.1.S1_atDN488752hypothetical protein-4e-1At1g66890-O.I.H.G.S.X.
0.1016.30.86PtpAffx.222121.1.S1_atpmrna39348hypothetical protein-1e+0At1g16916unknown proteinO.I.H.G.S.X.
0.0812.90.88PtpAffx.211253.1.S1_x_atpmrna22088hypothetical protein-5e-35At1g18070EF-1-alpha-related GTP-binding protein, putativeO.I.H.G.S.X.
0.0711.60.86PtpAffx.209082.1.S1_atpmrna17962--2e-2At4g30170peroxidase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.495.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.295.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.886.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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