Co-expression analysis

Gene ID	PtpAffx.212676.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to Atmg00970: - (HF=5e+0)
Module size	6 genes
NF	0.04
%ile	8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.79	PtpAffx.212676.1.S1_at	pmrna24793	hypothetical protein	-	5e+0	Atmg00970	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.85	PtpAffx.719.1.A1_at	CV270015	hypothetical protein	-	2e-8	At5g42980	ATTRX3 (THIOREDOXIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.82	PtpAffx.206073.1.S1_at	pmrna12036	-	-	9e-9	At3g57050	CBL (cystathionine beta-lyase)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.83	PtpAffx.209952.1.S1_at	pmrna19626	NAC domain protein, IPR003441	-	7e-38	At3g15170	CUC1 (CUP-SHAPED COTYLEDON1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.82	PtpAffx.112600.1.A1_at	DN491684	hypothetical protein	-	2e+0	At1g52470	hydrolase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.82	PtpAffx.201989.1.S1_s_at	pmrna3968	hypothetical protein	-	4e-1	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.0	95.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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