Co-expression analysis

Gene ID	PtpAffx.212609.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g56990: - (HF=3e+0)
Module size	6 genes
NF	0.24
%ile	43.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.81	PtpAffx.212609.1.S1_x_at	pmrna24688	hypothetical protein	-	3e+0	At5g56990	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.81	PtpAffx.203985.1.S1_at	pmrna7862	hypothetical protein	-	3e+0	At5g64040	PSAN	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.84	PtpAffx.35277.1.S1_at	BU874449	-	-	3e+0	At3g04280	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.81	PtpAffx.142294.1.A1_at	BI122392	-	-	1e+0	At1g52240	ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.81	PtpAffx.2704.3.S1_a_at	CK094650	hypothetical protein	-	4e-1	At4g18430	AtRABA1e (Arabidopsis Rab GTPase homolog A1e)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.81	PtpAffx.162370.2.S1_at	DN497290	hypothetical protein	-	1e-9	At2g02990	RNS1 (RIBONUCLEASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.1	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage