Co-expression analysis

Gene ID	PtpAffx.212576.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g36010: pathogenesis-related thaumatin family protein (HF=3e-1)
Module size	8 genes
NF	0.67
%ile	94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.93	PtpAffx.212576.1.S1_at	pmrna24636	hypothetical protein	-	3e-1	At4g36010	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.78	95.1	0.95	Ptp.1542.1.S1_s_at	CV225988	hypothetical protein	-	1e-11	At4g24220	VEP1 (VEIN PATTERNING 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.94	PtpAffx.204974.1.S1_at	pmrna9837	hypothetical protein	-	4e-5	At3g61390	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.95	Ptp.1542.1.S1_at	CV225988	hypothetical protein	-	1e-11	At4g24220	VEP1 (VEIN PATTERNING 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.94	PtpAffx.211636.1.S1_at	pmrna22804	SAUR family protein	-	2e-11	At2g46690	auxin-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.94	Ptp.640.2.S1_s_at	BU894839	hypothetical protein	-	1e-16	At2g06050	OPR3 (OPDA-REDUCTASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.95	PtpAffx.54692.1.A1_at	DN491905	hypothetical protein	-	6e+0	At2g25312	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.94	PtpAffx.211636.1.S1_s_at	pmrna22804	SAUR family protein	-	2e-11	At2g46690	auxin-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.0	92.9	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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