Co-expression analysis

Gene ID PtpAffx.212545.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g53480: PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) (HF=6e-47)
Module size 6 genes
NF 0.42
%ile 70.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.83PtpAffx.212545.1.S1_atpmrna24577hypothetical protein-6e-47At3g53480PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)O.I.H.G.S.X.
0.4774.60.83PtpAffx.215951.1.S1_atpmrna30431hypothetical protein-1e+0At2g26940zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.4471.90.86PtpAffx.146878.3.A1_atCV229184--5e+0At5g35631unknown proteinO.I.H.G.S.X.
0.4067.00.87PtpAffx.25648.2.A1_s_atCV230643hypothetical protein-6e-14At4g02280SUS3 (sucrose synthase 3)O.I.H.G.S.X.
0.2950.50.83PtpAffx.208923.1.S1_atpmrna17693hypothetical protein-6e-1At5g06240emb2735 (embryo defective 2735)O.I.H.G.S.X.
0.2543.60.85PtpAffx.200083.1.S1_s_atpmrna151hypothetical protein-9e+0At5g59310LTP4 (LIPID TRANSFER PROTEIN 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.699.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
6.397.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.897.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.497.0GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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