Co-expression analysis

Gene ID PtpAffx.212528.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g24460: unknown protein (HF=8e-5)
Module size 6 genes
NF 0.33
%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.94PtpAffx.212528.1.S1_s_atpmrna24535hypothetical protein-8e-5At5g24460unknown proteinO.I.H.G.S.X.
0.4067.00.95Ptp.2208.1.S1_s_atCK089346hypothetical protein-9e-11At3g47060ftsh7 (FtsH protease 7)O.I.H.G.S.X.
0.3661.60.94Ptp.7352.1.S1_s_atDN485448hypothetical protein-6e+0At5g50680SAE1B (SUMO ACTIVATING ENZYME 1B)O.I.H.G.S.X.
0.2850.50.94PtpAffx.202655.1.S1_atpmrna5304hypothetical protein-2e-10At5g48830unknown proteinO.I.H.G.S.X.
0.1932.70.95PtpAffx.139342.1.S1_atCN520206hypothetical protein-4e-1At3g32090transcription factor-relatedO.I.H.G.S.X.
0.1830.80.94PtpAffx.209194.1.S1_atpmrna18186hypothetical protein-2e-45At1g16320unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.195.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
3.092.9GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.791.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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