Co-expression analysis

Gene ID PtpAffx.212360.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g22620: ATSAC1 (suppressor of actin 1) (HF=5e-102)
Module size 6 genes
NF 0.49
%ile 80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.93PtpAffx.212360.1.S1_atpmrna24227hypothetical protein-5e-102At1g22620ATSAC1 (suppressor of actin 1)O.I.H.G.S.X.
0.7393.60.93PtpAffx.43105.1.A1_a_atCV256606hypothetical protein-3e-2At5g66730zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.6086.00.94PtpAffx.40192.1.A1_a_atCV264380hypothetical protein-2e+0At3g17020universal stress protein (USP) family proteinO.I.H.G.S.X.
0.5784.20.95PtpAffx.49806.1.A1_atCV270678hypothetical protein-1e-29At1g73950zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2238.30.95PtpAffx.28713.1.A1_atCV258396hypothetical protein-1e-5At4g12570UPL5 (UBIQUITIN PROTEIN LIGASE 5)O.I.H.G.S.X.
0.1729.10.95PtpAffx.154171.1.A1_atCV250301hypothetical protein-4e-1At1g55805BolA-like family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.396.9GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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