Co-expression analysis

Gene ID	PtpAffx.212320.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g02760: ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding (HF=3e-114)
Module size	6 genes
NF	0.35
%ile	60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.96	PtpAffx.212320.1.S1_at	pmrna24151	hypothetical protein	-	3e-114	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.31540.1.S1_s_at	CV257988	hypothetical protein	-	1e-14	At5g18230	transcription regulator NOT2/NOT3/NOT5 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	PtpAffx.5590.4.A1_a_at	CV241549	hypothetical protein	-	4e-4	At1g30825	DIS2 (DISTORTED TRICHOMES 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.96	PtpAffx.39028.1.S1_at	CV243200	hypothetical protein	-	3e-42	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.200519.1.S1_s_at	pmrna1048	hypothetical protein	-	1e-108	At1g80410	EMB2753 (EMBRYO DEFECTIVE 2753)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.96	PtpAffx.150823.1.S1_at	CF237230	hypothetical protein	-	3e-42	At2g37020	DNA binding / sequence-specific DNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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