Co-expression analysis

Gene ID	PtpAffx.212151.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g08590: CLAVATA1 receptor kinase (CLV1) (HF=8e-21)
Module size	7 genes
NF	0.04
%ile	9.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.78	PtpAffx.212151.1.S1_at	pmrna23828	hypothetical protein	-	8e-21	At1g08590	CLAVATA1 receptor kinase (CLV1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.78	PtpAffx.56200.1.A1_at	CV273917	-	-	3e-1	At2g11910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.84	PtpAffx.216586.1.S1_at	pmrna31463	hypothetical protein	-	5e+0	At5g43050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.84	PtpAffx.36879.1.A1_at	CV275101	hypothetical protein	-	2e-1	At3g49120	PRXCB (PEROXIDASE CB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.81	PtpAffx.202726.1.S1_at	pmrna5448	hypothetical protein	-	8e-21	At4g28650	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.81	PtpAffx.211700.1.S1_s_at	pmrna22932	hypothetical protein	-	3e+0	At4g30480	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.78	PtpAffx.204788.1.S1_at	pmrna9436	hypothetical protein	-	3e-22	At2g38300	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	95.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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