Co-expression analysis

Gene ID	PtpAffx.212132.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g69170: squamosa promoter-binding protein-like 6 (SPL6) (HF=3e-1)
Module size	6 genes
NF	0.53
%ile	83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.90	PtpAffx.212132.1.S1_s_at	pmrna23792	hypothetical protein	-	3e-1	At1g69170	squamosa promoter-binding protein-like 6 (SPL6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.90	PtpAffx.62585.1.A1_at	CV273954	-	-	5e-3	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.90	PtpAffx.192.1.S1_at	DN487464	hypothetical protein	-	2e+1	At5g60190	Ulp1 protease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.90	Ptp.3333.2.A1_at	CX658805	-	-	2e-12	At1g63940	monodehydroascorbate reductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.90	Ptp.6239.1.S1_at	DN490661	hypothetical protein	-	4e-8	At1g55020	LOX1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.90	PtpAffx.208712.1.S1_at	pmrna17276	high affinity inorganic phosphate transporter	-	2e-11	At5g43350	PHT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C156000004_at, orthologous to the query gene, PtpAffx.212132.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	PsAffx.C156000004_at	At1g69170	-	-	6e-2	At1g22890	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	PsAffx.C94000055_s_at	At1g69170	-	-	2e-8	At3g18600	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.44	63.3	PsAffx.C151000003_at	At1g69170	-	-	7e+0	At3g61980	serine protease inhibitor, Kazal-type family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	PsAffx.CL1586Contig1_at	At1g69170	-	-	6e+0	At4g03950	glucose-6-phosphate/phosphate translocator, putative	O.I.	H.G.	S.X.	Please select
0.29	39.0	PsAffx.C84000055_at	At1g69170	-	-	8e-1	At1g16230	syntaxin-related family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	PsAffx.C197000019_at	At1g69170	-	-	1e+0	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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