Co-expression analysis

Gene ID	PtpAffx.212062.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g48040: - (HF=1e-4)
Module size	11 genes
NF	0.13
%ile	25.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.80	PtpAffx.212062.1.S1_at	pmrna23671	hypothetical protein	-	1e-4	At2g48040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.86	PtpAffx.15674.1.S1_at	BI126540	-	-	2e-4	At3g63095	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.85	PtpAffx.163759.1.S1_at	CK101449	-	-	2e+1	At5g53680	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.85	PtpAffx.213214.1.S1_at	pmrna25851	hypothetical protein	-	4e-2	At3g45950	splicing factor-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.82	PtpAffx.218093.1.S1_at	pmrna33616	hypothetical protein	-	7e+0	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.85	PtpAffx.82207.1.A1_at	CV256115	-	-	9e+0	At1g36310	methyltransferase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.83	PtpAffx.37675.1.A1_at	CV242518	-	-	2e+0	At3g06895	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.82	PtpAffx.217106.1.S1_x_at	pmrna32248	hypothetical protein	-	6e-1	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.83	PtpAffx.127415.1.A1_at	CV258425	-	-	6e-1	At3g51820	G4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.82	PtpAffx.208041.1.S1_at	pmrna15964	hypothetical protein	-	2e+0	At2g18550	HB-2 (HOMEOBOX-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.83	PtpAffx.31048.1.A1_at	CV250786	-	-	5e-2	At5g52190	sugar isomerase (SIS) domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	94.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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