Co-expression analysis

Gene ID	PtpAffx.212032.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g29720: protein kinase family protein (HF=1e-1)
Module size	8 genes
NF	0.43
%ile	72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.91	PtpAffx.212032.1.S1_at	pmrna23624	hypothetical protein	-	1e-1	At1g29720	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.93	PtpAffx.205059.1.S1_at	pmrna10020	hypothetical protein	-	2e-73	At5g60700	glycosyltransferase family protein 2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.91	PtpAffx.204407.1.S1_at	pmrna8658	hypothetical protein	-	3e-2	At2g45420	LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.91	PtpAffx.205723.1.S1_x_at	pmrna11295	hypothetical protein	-	2e-5	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.93	PtpAffx.207438.1.S1_at	pmrna14771	hypothetical protein	-	3e-1	At5g42146	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.93	PtpAffx.5989.2.S1_s_at	CV259773	hypothetical protein	-	6e-8	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.93	Ptp.3892.1.S1_at	CV275943	hypothetical protein	-	1e-1	At2g44175	N-myristoyltransferase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.144812.1.S1_at	DN500920	hypothetical protein	-	1e+0	At3g04630	WDL1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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