Co-expression analysis

Gene ID PtpAffx.211989.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g28660: copper-binding family protein (HF=2e-3)
Module size 11 genes
NF 0.41
%ile 69.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5884.20.84PtpAffx.211989.1.S1_atpmrna23546hypothetical protein-2e-3At2g28660copper-binding family proteinO.I.H.G.S.X.
0.5380.50.86PtpAffx.153815.1.A1_atCV241744--2e-1At1g77765unknown proteinO.I.H.G.S.X.
0.4673.70.86PtpAffx.208613.1.S1_atpmrna17102--4e-5At3g50940AAA-type ATPase family proteinO.I.H.G.S.X.
0.4471.90.86PtpAffx.207390.1.S1_atpmrna14666--2e-9At1g52940PAP5 (PURPLE ACID PHOSPHATASE 5)O.I.H.G.S.X.
0.4369.70.86PtpAffx.5743.1.A1_atCV236133--2e-2At1g36640unknown proteinO.I.H.G.S.X.
0.3964.60.86PtpAffx.203326.1.S1_atpmrna6618hypothetical protein-7e-4At2g46510ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)O.I.H.G.S.X.
0.3559.70.86PtpAffx.206263.1.S1_atpmrna12425hypothetical protein-1e-1At2g31230ATERF15 (Ethylene-responsive element binding factor 15)O.I.H.G.S.X.
0.3357.50.88PtpAffx.60907.1.A1_atAY496448.1--1e-112At2g01830WOL (WOODEN LEG)O.I.H.G.S.X.
0.3255.20.86PtpAffx.200958.1.S1_atpmrna1878hypothetical protein-4e-2At1g05065CLE20 (CLAVATA3/ESR-RELATED 20)O.I.H.G.S.X.
0.2850.50.86PtpAffx.218919.1.S1_atpmrna34676hypothetical protein-2e+0At1g20790F-box family proteinO.I.H.G.S.X.
0.2340.50.88PtpAffx.80411.1.A1_atDN487715--3e+0At1g02074unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.691.3GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM328059Populus x canescens leaf control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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