Co-expression analysis

Gene ID	PtpAffx.211939.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g04280: unknown protein (HF=1e-37)
Module size	7 genes
NF	0.40
%ile	68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	0.95	PtpAffx.211939.1.S1_s_at	pmrna23444	hypothetical protein	-	1e-37	At2g04280	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.94	PtpAffx.90782.1.S1_s_at	CK091819	hypothetical protein	-	2e+0	At1g06920	OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.200613.1.S1_at	pmrna1202	hypothetical protein	-	1e-166	At3g16060	kinesin motor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.3647.1.A1_at	CV230293	hypothetical protein	-	9e-5	At2g26680	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	Ptp.5030.1.A1_x_at	DN485279	hypothetical protein	-	4e-64	At1g77590	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.207723.1.S1_s_at	pmrna15345	hypothetical protein	-	8e-76	At2g39750	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.95	PtpAffx.145088.1.A1_at	DN488679	hypothetical protein	-	1e+0	At3g50900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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