Co-expression analysis

Gene ID PtpAffx.211932.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g12720: NUDT7 (HF=6e-6)
Module size 26 genes
NF 0.12
%ile 23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9499.60.84PtpAffx.211932.1.S1_atpmrna23430hypothetical protein-6e-6At4g12720NUDT7O.I.H.G.S.X.
0.3052.00.92PtpAffx.212647.1.S1_atpmrna24750hypothetical protein-2e-12At5g61200-O.I.H.G.S.X.
0.3052.00.94PtpAffx.206353.1.S1_atpmrna12609hypothetical protein-5e-29At3g08760ATSIKO.I.H.G.S.X.
0.2441.80.95Ptp.4864.1.S1_atCV265988hypothetical protein-3e-24At5g47040LON2 (LON PROTEASE 2)O.I.H.G.S.X.
0.2340.50.88PtpAffx.69459.1.A1_atCV268225--3e-8At5g26731unknown proteinO.I.H.G.S.X.
0.1830.80.94PtpAffx.24469.1.A1_atCV246295hypothetical protein-8e-27At3g22290unknown proteinO.I.H.G.S.X.
0.1830.80.94PtpAffx.50368.2.A1_a_atCV247139hypothetical protein-2e-6At5g23395-O.I.H.G.S.X.
0.1729.10.93PtpAffx.58492.1.S1_atCV257173hypothetical protein-2e-22At2g25110SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)O.I.H.G.S.X.
0.1626.90.95Ptp.3625.1.A1_atCV267089hypothetical protein-2e-12At3g07560PEX13 (PEROXIN 13)O.I.H.G.S.X.
0.1525.30.95PtpAffx.135825.1.S1_atCF936294hypothetical protein-8e-34At3g46180UTR5 (UDP-GALACTOSE TRANSPORTER 5)O.I.H.G.S.X.
0.1423.50.92PtpAffx.204247.1.S1_s_atpmrna8349hypothetical protein-9e-5At4g22420-O.I.H.G.S.X.
0.1423.50.93PtpAffx.207692.1.S1_s_atpmrna15266hypothetical protein-0At3g554102-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putativeO.I.H.G.S.X.
0.1423.50.95PtpAffx.67630.1.A1_atDN491193hypothetical protein-3e-4At3g02410-O.I.H.G.S.X.
0.1423.50.95PtpAffx.205626.1.S1_atpmrna11117hypothetical protein-1e-82At1g71696SOL1 (SUPPRESSOR OF LLP1 1)O.I.H.G.S.X.
0.1423.50.92PtpAffx.48855.1.S1_atCV239604hypothetical protein-1e-20At5g22950VPS24.1O.I.H.G.S.X.
0.1321.60.94PtpAffx.128118.1.A1_atCV230581hypothetical protein-3e-4At4g16845VRN2 (REDUCED VERNALIZATION RESPONSE 2)O.I.H.G.S.X.
0.1219.60.85PtpAffx.210289.1.S1_atpmrna20243hypothetical protein-0At5g42020BIP2O.I.H.G.S.X.
0.1118.10.92PtpAffx.53567.1.S1_atCK091830hypothetical protein-3e-55At5g41360XPB2O.I.H.G.S.X.
0.1016.30.96PtpAffx.11808.1.S1_atCB239558hypothetical protein-8e-125At1g70160unknown proteinO.I.H.G.S.X.
0.0914.60.88PtpAffx.212115.1.S1_x_atpmrna23759hypothetical protein-1e-2At5g63650SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)O.I.H.G.S.X.
0.0914.60.93PtpAffx.211136.1.S1_s_atpmrna21877hypothetical protein-2e-27At3g03560unknown proteinO.I.H.G.S.X.
0.0812.90.95PtpAffx.222747.1.S1_atpmrna40370hypothetical protein-2e-31At3g04970zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.069.80.92PtpAffx.1482.1.S1_s_atCV234717hypothetical protein-3e-119At3g18820ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F)O.I.H.G.S.X.
0.058.30.94PtpAffx.74269.1.S1_atBP934375f-box family protein-5e+0At3g02870VTC4O.I.H.G.S.X.
0.058.30.92Ptp.4010.1.S1_atCV232207hypothetical protein-9e-28At4g29960unknown proteinO.I.H.G.S.X.
0.046.90.93Ptp.5572.1.S1_atCN549739hypothetical protein-8e-24At3g04780-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.691.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.590.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.785.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage