Co-expression analysis

Gene ID PtpAffx.211797.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g21530: endonuclease/exonuclease/phosphatase family protein (HF=1e-23)
Module size 7 genes
NF 0.69
%ile 95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.92PtpAffx.211797.1.S1_s_atpmrna23135hypothetical protein-1e-23At3g21530endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.7393.60.95PtpAffx.795.1.A1_atCV273354hypothetical protein-5e+0At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.6791.10.96PtpAffx.214531.1.S1_atpmrna28244hypothetical protein-1e-7At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.6086.00.97Ptp.7056.1.S1_atBU884296hypothetical protein-8e-1At5g39240unknown proteinO.I.H.G.S.X.
0.6086.00.98PtpAffx.213719.1.S1_atpmrna26773hypothetical protein-2e-48At3g51630WNK5 (WITH NO LYSINE (K) KINASE 5)O.I.H.G.S.X.
0.5784.20.96PtpAffx.77546.1.S1_s_atBI127036hypothetical protein-3e-1At5g12310zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5582.20.94PtpAffx.225610.1.S1_atpmrna45070hypothetical protein-9e-4At5g01050laccase family protein / diphenol oxidase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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