Co-expression analysis

Gene ID PtpAffx.21178.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g61210: SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) (HF=1e+0)
Module size 6 genes
NF 0.77
%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.87PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.
0.9199.20.91PtpAffx.209537.1.S1_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinO.I.H.G.S.X.
0.9199.20.92PtpAffx.162331.1.S1_atCA821362--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)O.I.H.G.S.X.
0.8096.00.95PtpAffx.200185.1.S1_atpmrna342hypothetical protein-8e-4At2g44450BGLU15 (BETA GLUCOSIDASE 15)O.I.H.G.S.X.
0.7393.60.94PtpAffx.127059.1.A1_atCV258719hypothetical protein-1e-4At1g66270BGLU21O.I.H.G.S.X.
0.4067.00.92PtpAffx.212416.1.S1_atpmrna24321hypothetical protein-5e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7794.90.83Ptp.7218.1.S1_atCV273365hypothetical protein-2e-5At3g53980protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.6086.00.88PtpAffx.224455.1.S1_atpmrna43009hypothetical protein-1e-11At1g08440-O.I.H.G.S.X.
0.5380.50.88PtpAffx.209537.1.S1_s_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinO.I.H.G.S.X.
0.5078.60.88PtpAffx.225487.1.S1_atpmrna44866hypothetical protein-7e-1At2g38360PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)O.I.H.G.S.X.
0.4471.90.82PtpAffx.202897.1.S1_atpmrna5733hypothetical protein-3e-6At3g13980unknown proteinO.I.H.G.S.X.
0.4268.60.92PtpAffx.162331.2.S1_atAJ780051--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)O.I.H.G.S.X.
0.4067.00.86PtpAffx.203475.1.S1_atpmrna6918hypothetical protein-5e-1At4g09320NDPK1O.I.H.G.S.X.
0.4067.00.90PtpAffx.212416.1.S1_x_atpmrna24321hypothetical protein-5e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.
0.3863.70.94PtpAffx.17653.3.A1_atCV242489--7e+0Atmg01020-O.I.H.G.S.X.
0.3661.60.96PtpAffx.200185.1.S1_s_atpmrna342hypothetical protein-8e-4At2g44450BGLU15 (BETA GLUCOSIDASE 15)O.I.H.G.S.X.
0.3559.70.86PtpAffx.56188.1.A1_atCV274756hypothetical protein-5e+0At2g14560LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)O.I.H.G.S.X.
0.3357.50.92PtpAffx.63615.1.S1_atDN491597hypothetical protein-2e+0At5g57685AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)O.I.H.G.S.X.
0.2950.50.87PtpAffx.12427.2.S1_atCV227991--1e-19At4g04210PUX4O.I.H.G.S.X.
0.2645.20.91PtpAffx.158291.1.A1_atBP931571--3e+0At5g65320basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2543.60.90Ptp.3670.1.S1_atCV273865hypothetical protein-5e-11At4g08300nodulin MtN21 family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.399.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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