Co-expression analysis

Gene ID PtpAffx.21178.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g61210: SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) (HF=1e+0)
Module size 6 genes
NF 0.77
%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.87PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.
0.9199.20.91PtpAffx.209537.1.S1_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinO.I.H.G.S.X.
0.9199.20.92PtpAffx.162331.1.S1_atCA821362--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)O.I.H.G.S.X.
0.8096.00.95PtpAffx.200185.1.S1_atpmrna342hypothetical protein-8e-4At2g44450BGLU15 (BETA GLUCOSIDASE 15)O.I.H.G.S.X.
0.7393.60.94PtpAffx.127059.1.A1_atCV258719hypothetical protein-1e-4At1g66270BGLU21O.I.H.G.S.X.
0.4067.00.92PtpAffx.212416.1.S1_atpmrna24321hypothetical protein-5e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.399.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.8753.1.A1_at, orthologous to the query gene, PtpAffx.21178.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5065.7Zm.8753.1.A1_atAt5g61210--2e+1At5g37820NIP4O.I.H.G.S.X.
0.8094.0Zm.6283.1.S1_a_atAt5g61210--3e+0At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.5571.6Zm.2288.1.S1_atAt5g61210hypothetical protein LOC100272544-7e-1At2g34750RNA polymerase I specific transcription initiation factor RRN3 family proteinO.I.H.G.S.X.
0.5469.8ZmAffx.406.10.A1_atAt5g61210--1e+1At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.
0.5267.3Zm.5103.1.A1_atAt5g61210--3e-15At3g13460ECT2O.I.H.G.S.X.
0.4149.7Zm.13206.1.S1_atAt5g61210hypothetical protein LOC100192621-3e+0At5g67490unknown proteinO.I.H.G.S.X.
0.4149.7Zm.17969.1.A1_atAt5g61210--5e+0At4g38360unknown proteinO.I.H.G.S.X.
0.3945.6Zm.13209.1.A1_atAt5g61210cysteine proteinase inhibitor B-2e+0At4g18620-O.I.H.G.S.X.
0.3437.2Zm.3755.1.A1_a_atAt5g61210derlin2-1 /// derlin2-2-8e-13At4g21810DER2.1 (DERLIN-2.1)O.I.H.G.S.X.
0.3437.2Zm.3016.1.S1_atAt5g61210alpha-expansin 3-2e+0At3g55500ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)O.I.H.G.S.X.
0.3233.4Zm.15495.5.A1_a_atAt5g61210hypothetical protein LOC100272465 /// ribosomal protein L17-6e-19At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.2828.1Zm.8568.1.S1_atAt5g61210--2e+0At1g06790RNA polymerase Rpb7 N-terminal domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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