Co-expression analysis

Gene ID PtpAffx.21178.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g61210: SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) (HF=1e+0)
Module size 6 genes
NF 0.77
%ile 98.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.87PtpAffx.21178.1.S1_atBU887045hypothetical protein-1e+0At5g61210SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)O.I.H.G.S.X.
0.9199.20.91PtpAffx.209537.1.S1_atpmrna18896hypothetical protein-1e+0At3g59250F-box family proteinO.I.H.G.S.X.
0.9199.20.92PtpAffx.162331.1.S1_atCA821362--1e+0At4g11640ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)O.I.H.G.S.X.
0.8096.00.95PtpAffx.200185.1.S1_atpmrna342hypothetical protein-8e-4At2g44450BGLU15 (BETA GLUCOSIDASE 15)O.I.H.G.S.X.
0.7393.60.94PtpAffx.127059.1.A1_atCV258719hypothetical protein-1e-4At1g66270BGLU21O.I.H.G.S.X.
0.4067.00.92PtpAffx.212416.1.S1_atpmrna24321hypothetical protein-5e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.399.0GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.85304.1.S1_at, orthologous to the query gene, PtpAffx.21178.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.9GmaAffx.85304.1.S1_atAt5g61210--5e+0At5g38290peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.7388.9Gma.13099.1.S1_atAt5g61210--8e-12At1g05190emb2394 (embryo defective 2394)O.I.H.G.S.X.
0.7288.1Gma.3588.1.S1_atAt5g61210--2e-52At3g1312030S ribosomal protein S10, chloroplast, putativeO.I.H.G.S.X.
0.7288.1Gma.7200.1.S1_atAt5g61210--6e-32At1g17650GLYR2 (GLYOXYLATE REDUCTASE 2)O.I.H.G.S.X.
0.6986.8Gma.13001.2.S1_a_atAt5g61210--5e-12At4g17560ribosomal protein L19 family proteinO.I.H.G.S.X.
0.6886.4Gma.7012.1.S1_a_atAt5g61210--7e-3At3g29070protein transmembrane transporterO.I.H.G.S.X.
0.6181.8Gma.10122.1.A1_atAt5g61210--3e-8At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.
0.6181.8Gma.8261.1.A1_s_atAt5g61210--1e-1At5g14910heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.6181.8Gma.7148.1.A1_atAt5g61210--9e-17At5g57170macrophage migration inhibitory factor family protein / MIF family proteinO.I.H.G.S.X.
0.6080.7Gma.1963.1.S1_s_atAt5g61210--8e-23At1g50900-O.I.H.G.S.X.
0.5778.8Gma.5413.3.S1_a_atAt5g61210--1e-9At2g24090ribosomal protein L35 family proteinO.I.H.G.S.X.
0.5678.2Gma.10595.1.S1_atAt5g61210--2e-40At1g64510ribosomal protein S6 family proteinO.I.H.G.S.X.
0.5474.8Gma.7972.1.S1_atAt5g61210--2e+0At4g24310unknown proteinO.I.H.G.S.X.
0.5273.1GmaAffx.91630.1.S1_s_atAt5g61210--4e-1At1g32990PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)O.I.H.G.S.X.
0.5172.3Gma.10730.1.S1_atAt5g61210--1e-16At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.5071.7GmaAffx.92241.1.S1_s_atAt5g61210--3e-16At1g11860aminomethyltransferase, putativeO.I.H.G.S.X.
0.4968.3Gma.5851.3.S1_atAt5g61210--1e-11At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.4968.3Gma.7100.1.A1_atAt5g61210--1e-6At4g14890ferredoxin family proteinO.I.H.G.S.X.
0.4665.5GmaAffx.64090.1.S1_atAt5g61210--2e-20At4g29060emb2726 (embryo defective 2726)O.I.H.G.S.X.
0.4259.3Gma.11178.1.S1_atAt5g61210--1e-7At1g29070ribosomal protein L34 family proteinO.I.H.G.S.X.
0.4158.1Gma.1389.1.S1_atAt5g61210--4e-48At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.3853.3Gma.1355.1.S1_atAt5g61210--1e-4At3g54210ribosomal protein L17 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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