Co-expression analysis

Gene ID	PtpAffx.211669.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g46940: unknown protein (HF=9e-6)
Module size	11 genes
NF	0.35
%ile	61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	0.92	PtpAffx.211669.1.S1_x_at	pmrna22876	hypothetical protein	-	9e-6	At2g46940	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.93	Ptp.3337.1.S1_s_at	BU892645	hypothetical protein	-	3e-1	At5g56100	glycine-rich protein / oleosin	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.95	PtpAffx.19246.1.S1_at	CV245825	hypothetical protein	-	2e-32	At2g35940	BLH1 (BEL1-LIKE HOMEODOMAIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.249.113.S1_at	CV280925	hypothetical protein	-	6e+0	At5g23140	NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.95	Ptp.2716.1.S1_at	AY833406.1	glutaredoxin C1	-	5e-7	At5g63030	glutaredoxin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.96	PtpAffx.202071.1.S1_at	pmrna4132	hypothetical protein	-	6e-30	At5g36210	serine-type peptidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	PtpAffx.4687.1.S1_s_at	CV280620	hypothetical protein	-	1e-2	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	0.93	PtpAffx.225668.1.S1_at	pmrna45181	hypothetical protein	-	1e-3	At1g23780	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.94	PtpAffx.6684.3.A1_a_at	CV241957	hypothetical protein	-	2e-6	At4g14570	acylaminoacyl-peptidase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.93	PtpAffx.3081.1.S1_at	DN491909	hypothetical protein	-	1e+0	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.93	Ptp.5851.1.S1_s_at	BU866697	hypothetical protein	-	3e-30	At3g10850	GLY2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	91.3	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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