Co-expression analysis

Gene ID PtpAffx.211622.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g35580: CINV1 (cytosolic invertase 1) (HF=9e-6)
Module size 6 genes
NF 0.26
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.80PtpAffx.211622.1.S1_atpmrna22777--9e-6At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.4673.70.80PtpAffx.119247.1.A1_atDN486218--4e+0At5g50665unknown proteinO.I.H.G.S.X.
0.3153.70.81PtpAffx.218251.1.S1_atpmrna33803hypothetical protein-2e+1At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.3153.70.81PtpAffx.217704.1.S1_atpmrna33068hypothetical protein-3e-86Atcg01280-O.I.H.G.S.X.
0.1729.10.81PtpAffx.208921.1.S1_atpmrna17689hypothetical protein-7e-2At3g06390integral membrane family proteinO.I.H.G.S.X.
0.0914.60.80PtpAffx.219999.1.S1_atpmrna36231hypothetical protein-9e-6At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5582.20.76PtpAffx.212629.1.S1_atpmrna24724hypothetical protein-2e-2At1g35365unknown proteinO.I.H.G.S.X.
0.3559.70.77PtpAffx.204920.1.S1_atpmrna9731hypothetical protein-3e+0At2g16575unknown proteinO.I.H.G.S.X.
0.3357.50.78PtpAffx.208304.1.S1_a_atpmrna16517hypothetical protein-6e+0At1g31060unknown proteinO.I.H.G.S.X.
0.2543.60.72PtpAffx.225462.1.S1_atpmrna44824hypothetical protein-2e+0At5g47420-O.I.H.G.S.X.
0.1729.10.76PtpAffx.82160.1.A1_atCV258238--1e+1At5g66211unknown proteinO.I.H.G.S.X.
0.1626.90.79PtpAffx.218048.1.S1_atpmrna33565hypothetical protein-2e+0At5g28450chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putativeO.I.H.G.S.X.
0.1525.30.77PtpAffx.218957.1.S1_s_atpmrna34725hypothetical protein-8e-2At1g28290AGP31 (arabinogalactan-protein 31)O.I.H.G.S.X.
0.1423.50.77PtpAffx.220554.1.S1_atpmrna36958hypothetical protein-3e-1At5g23840MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.1118.10.78PtpAffx.210088.1.S1_atpmrna19871hypothetical protein-1e+0At3g09600myb family transcription factorO.I.H.G.S.X.
0.1118.10.76PtpAffx.45793.1.A1_atCK094541hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein-1e+0At1g59171ATP binding / inositol pentakisphosphate 2-kinaseO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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