CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.211622.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g35580: CINV1 (cytosolic invertase 1) (HF=9e-6)

Module size 6 genes

NF 0.26

%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 84.2 0.80 PtpAffx.211622.1.S1_at pmrna22777 - - 9e-6 At1g35580 CINV1 (cytosolic invertase 1) O.I. H.G. S.X.
0.46 73.7 0.80 PtpAffx.119247.1.A1_at DN486218 - - 4e+0 At5g50665 unknown protein O.I. H.G. S.X.
0.31 53.7 0.81 PtpAffx.218251.1.S1_at pmrna33803 hypothetical protein - 2e+1 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.
0.31 53.7 0.81 PtpAffx.217704.1.S1_at pmrna33068 hypothetical protein - 3e-86 Atcg01280 - O.I. H.G. S.X.
0.17 29.1 0.81 PtpAffx.208921.1.S1_at pmrna17689 hypothetical protein - 7e-2 At3g06390 integral membrane family protein O.I. H.G. S.X.
0.09 14.6 0.80 PtpAffx.219999.1.S1_at pmrna36231 hypothetical protein - 9e-6 At5g18170 GDH1 (GLUTAMATE DEHYDROGENASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.76	PtpAffx.212629.1.S1_at	pmrna24724	hypothetical protein	-	2e-2	At1g35365	unknown protein	O.I.	H.G.	S.X.
0.35	59.7	0.77	PtpAffx.204920.1.S1_at	pmrna9731	hypothetical protein	-	3e+0	At2g16575	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.78	PtpAffx.208304.1.S1_a_at	pmrna16517	hypothetical protein	-	6e+0	At1g31060	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.72	PtpAffx.225462.1.S1_at	pmrna44824	hypothetical protein	-	2e+0	At5g47420	-	O.I.	H.G.	S.X.
0.17	29.1	0.76	PtpAffx.82160.1.A1_at	CV258238	-	-	1e+1	At5g66211	unknown protein	O.I.	H.G.	S.X.
0.16	26.9	0.79	PtpAffx.218048.1.S1_at	pmrna33565	hypothetical protein	-	2e+0	At5g28450	chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative	O.I.	H.G.	S.X.
0.15	25.3	0.77	PtpAffx.218957.1.S1_s_at	pmrna34725	hypothetical protein	-	8e-2	At1g28290	AGP31 (arabinogalactan-protein 31)	O.I.	H.G.	S.X.
0.14	23.5	0.77	PtpAffx.220554.1.S1_at	pmrna36958	hypothetical protein	-	3e-1	At5g23840	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.
0.11	18.1	0.78	PtpAffx.210088.1.S1_at	pmrna19871	hypothetical protein	-	1e+0	At3g09600	myb family transcription factor	O.I.	H.G.	S.X.
0.11	18.1	0.76	PtpAffx.45793.1.A1_at	CK094541	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein	-	1e+0	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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