Co-expression analysis

Gene ID PtpAffx.211622.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g35580: CINV1 (cytosolic invertase 1) (HF=9e-6)
Module size 6 genes
NF 0.26
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5784.20.80PtpAffx.211622.1.S1_atpmrna22777--9e-6At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.4673.70.80PtpAffx.119247.1.A1_atDN486218--4e+0At5g50665unknown proteinO.I.H.G.S.X.
0.3153.70.81PtpAffx.218251.1.S1_atpmrna33803hypothetical protein-2e+1At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.3153.70.81PtpAffx.217704.1.S1_atpmrna33068hypothetical protein-3e-86Atcg01280-O.I.H.G.S.X.
0.1729.10.81PtpAffx.208921.1.S1_atpmrna17689hypothetical protein-7e-2At3g06390integral membrane family proteinO.I.H.G.S.X.
0.0914.60.80PtpAffx.219999.1.S1_atpmrna36231hypothetical protein-9e-6At5g18170GDH1 (GLUTAMATE DEHYDROGENASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.0GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1610914_at, orthologous to the query gene, PtpAffx.211622.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8093.61610914_atAt1g35580--3e+0At4g04745unknown proteinO.I.H.G.S.X.
0.8093.61616654_x_atAt1g35580--2e+1At4g01430nodulin MtN21 family proteinO.I.H.G.S.X.
0.7792.31608259_atAt1g35580hypothetical protein LOC100255358-2e-6At5g59520ZIP2O.I.H.G.S.X.
0.7189.51618607_s_atAt1g35580hypothetical protein LOC100255358-1e-3At1g55910ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)O.I.H.G.S.X.
0.5072.71616954_s_atAt1g35580hypothetical protein LOC100252003-2e+1At5g04470SIM (SIAMESE)O.I.H.G.S.X.
0.3650.71620683_atAt1g35580hypothetical protein LOC100245630-8e-9At4g26160ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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